needle Results |
Matrix used |
Blosum62 |
Gap penalties |
used |
Gap open |
10.0 |
Gap extend |
0.5 |
|
|
######################################## # Program: needle # Rundate: Fri May 30 22:14:24 2003 # Align_format: srspair # Report_file: /ebi/extserv/old-work/83271054329254.needle.res ######################################## #======================================= # # Aligned_sequences: 2 # 1: sequence_1 # 2: sequence_2 # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 443 # Identity: 62/443 (14.0%) # Similarity: 84/443 (19.0%) # Gaps: 251/443 (56.7%) # Score: 69.5 # # #=======================================
sequence_1 1 QGAGAAAAAAGGAGQGGYGGLGGQGAGQGGYGGLGGQGAGQGAGAAAAAA 50 sequence_2 1 0
sequence_1 51 AGGAGQGGYGGLGSQGAGRGGQGAGAAAAAAGGAGQGGYGGLGSQGA--- 97 .|.|.|.|| sequence_2 1 MGALSSAGAVQL 12
sequence_1 98 -----------GRG-----GLGGQGAGAAAA-----------AAAGGAGQ 120 .|| ....|.|..||. ...|.|.| sequence_2 13 YQCWRRRQQKRQRGVEAHMPRSSQSARTAAVHPSSFSHTTSHLTTGTAKQ 62
sequence_1 121 GGYGGLGNQGAGRGGQGAAAAAAGGAGQGGYGGLGSQGAGRGGLGGQGAG 170 .....:......|..|...|.....:.:.|:..:.::...| sequence_2 63 DRERDIDVNAMQRSFQRLYAVMQDESRRQGHDAVATERVAR--------- 103
sequence_1 171 AAAAAAGGAGAAAGGAGQGGLGGQGAGQGAGAAAAAAGGVRQGGYGGLGS 220 |:.|...:......:..||:..: |||.|.|. :.: sequence_2 104 -ASHAVTRSPQRRSRSCPGGVIPR-----AGADARAK----------VDN 137
sequence_1 221 QGAGRGGQGAGA-AAAAAGGAGQGGYGGLGGQ--------GVGRGGLGGQ 261 :.|..||.|.|| ...|...:|...|.|:... ....|.:||| sequence_2 138 EEAQDGGPGPGAYTLPALPPSGPTAYLGMSAPRFPYQQALAATEGNVGGQ 187
sequence_1 262 GAGAAAAGGA-----------------GQGGYGGVGSGASAASAAASRLS 294 ||.|||||.. |.|.|. ..||.|.:: sequence_2 188 GAAAAAAGNGHPPHPNTDLFLAHLATPGPGDYD--------VDAATSLVN 229
sequence_1 295 SPQASSRVSSAVSNLVASGPTNSAALSSTISNVVSQIGASNPGLSGCDVL 344 .|.|....:..||.||.:| sequence_2 230 RPGAIIGRAPRVSLLVPTG 248
sequence_1 345 IQALLEVVSALIQILGSSSIGQVNYGSAGQATQIVGQSVYQAL 387 sequence_2 249 248
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