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SEQUENCE ANALYSIS
 
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needle Results
Matrix used Blosum62
Gap penalties used
Gap open 10.0
Gap extend 0.5



########################################
# Program: needle
# Rundate: Fri May 30 22:14:24 2003
# Align_format: srspair
# Report_file: /ebi/extserv/old-work/83271054329254.needle.res
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: sequence_1
# 2: sequence_2
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 443
# Identity: 62/443 (14.0%)
# Similarity: 84/443 (19.0%)
# Gaps: 251/443 (56.7%)
# Score: 69.5
#
#
#=======================================

sequence_1 1 QGAGAAAAAAGGAGQGGYGGLGGQGAGQGGYGGLGGQGAGQGAGAAAAAA 50

sequence_2 1 0

sequence_1 51 AGGAGQGGYGGLGSQGAGRGGQGAGAAAAAAGGAGQGGYGGLGSQGA--- 97
.|.|.|.||
sequence_2 1 MGALSSAGAVQL 12

sequence_1 98 -----------GRG-----GLGGQGAGAAAA-----------AAAGGAGQ 120
.|| ....|.|..||. ...|.|.|
sequence_2 13 YQCWRRRQQKRQRGVEAHMPRSSQSARTAAVHPSSFSHTTSHLTTGTAKQ 62

sequence_1 121 GGYGGLGNQGAGRGGQGAAAAAAGGAGQGGYGGLGSQGAGRGGLGGQGAG 170
.....:......|..|...|.....:.:.|:..:.::...|
sequence_2 63 DRERDIDVNAMQRSFQRLYAVMQDESRRQGHDAVATERVAR--------- 103

sequence_1 171 AAAAAAGGAGAAAGGAGQGGLGGQGAGQGAGAAAAAAGGVRQGGYGGLGS 220
|:.|...:......:..||:..: |||.|.|. :.:
sequence_2 104 -ASHAVTRSPQRRSRSCPGGVIPR-----AGADARAK----------VDN 137

sequence_1 221 QGAGRGGQGAGA-AAAAAGGAGQGGYGGLGGQ--------GVGRGGLGGQ 261
:.|..||.|.|| ...|...:|...|.|:... ....|.:|||
sequence_2 138 EEAQDGGPGPGAYTLPALPPSGPTAYLGMSAPRFPYQQALAATEGNVGGQ 187

sequence_1 262 GAGAAAAGGA-----------------GQGGYGGVGSGASAASAAASRLS 294
||.|||||.. |.|.|. ..||.|.::
sequence_2 188 GAAAAAAGNGHPPHPNTDLFLAHLATPGPGDYD--------VDAATSLVN 229

sequence_1 295 SPQASSRVSSAVSNLVASGPTNSAALSSTISNVVSQIGASNPGLSGCDVL 344
.|.|....:..||.||.:|
sequence_2 230 RPGAIIGRAPRVSLLVPTG 248

sequence_1 345 IQALLEVVSALIQILGSSSIGQVNYGSAGQATQIVGQSVYQAL 387

sequence_2 249 248


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